CINNA: An R/CRAN package to decipher Central Informative Nodes in Network Analysis
A systematic survey of centrality measures for protein-protein interaction networks.
Systems biology recalls to us some aspects of traditional medicine
Valproic acid inhibits the protective effects of stromal cells against chemotherapy in breast cancer: Insights from proteomics and systems biology.
Integrated use of bioinformatic resources reveals that co-targeting of histone deacetylases, IKBK and SRC inhibits epithelial-mesenchymal transition in cancer.
Phytosomal-curcumin antagonizes cell growth and migration, induced by thrombin through AMP-Kinase in breast cancer.
A logic-based dynamic modeling approach to explicate the evolution of the central dogma of molecular biology M. Jafari, N. Ansari-Pour, S. Azimzadeh, M. Mirzaie.
Human T-Lymphotropic Virus 1 (HTLV-1) Pathogenesis: A Systems Virology Study S. H. Mozhgani, M. Z. Ghobadi, M. Teymoori-Rad, T. M. Azad, M. Mirzaie, M. Sheikhi, S. M. Jazayeri, R. Shabahrami, H. Ghourchian, M. Jafari, S. A. Rezaee, M. Norouzi.
Systems Biomedicine of Rabies Delineates the Affected Signaling Pathways S. A. Jamalkandi, S. H. Mozhgani, H. Gholami Pourbadie, M. Mirzaie, F. Noorbakhsh, B. Vaziri, A. Gholami, N. Ansari-Pour, M. Jafari
Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd Zichen Wang et al.
Proteomics of hot-wet and cold-dry temperaments proposed in Iranian traditional medicine: a Network-based Study Rezadoost H., Karimi M. and Jafari M.
Testis-Specific Y-Centric Protein-Protein Interaction Network Provides Clues to the Etiology of Severe Spermatogenic Failure Ansari-Pour, N., Razaghi-Moghadam, Z., Barneh, F. and Jafari, M
Interlog protein network: an evolutionary benchmark of protein interaction networks for the evaluation of clustering algorithms Jafari M, Mirzaie M, Sadeghi M
Updates on drug target network; facilitating polypharmacology and data integration by growth of DrugBank database Barneh F, Jafari M, Mirzaie M
Signaling network of lipids as a comprehensive scaffold for omics data integration in sputum of COPD patients Azimzadeh Jamalkandi S, Mirzaie M, Jafari M, Mehrani H, Shariati P, Khodabandeh M
PEIMAN 1.0: Post translational modification Enrichment, Integration and Matching ANalysis Nickchi P, Jafari M, Kalantari S
Proteomics and Traditional Medicine: New Aspect in Explanation of Temperaments Jafari M, Rezadoost H, Karimi M, Mirzaie M, Rezaie-Tavirani M, Khodabandeh M, Kordafshari G, Abbasian N, Nickchi P, Gilany K, Ghassempour
Atopic dermatitis-associated protein interaction network lead to new insights in chronic sulfur mustard skin lesion mechanisms Amiri M., Jafari M., Azimzadeh Jamalkandi S., Davoodi S. M.
Exploring biological processes involved in embryonic stem cell differentiation by analyzing proteomic data Jafari M., Mirzaie M., Sadeghi M., Marashi S. A., Rezaei-Tavirani M.
Comparison of in-gel protein separation techniques commonly used for fractionation in mass spectrometry-based proteomic profiling.