Publications

  • BRIEFINGS IN BIOINFORMATICS - 2018

    Integrated use of bioinformatic resources reveals that co-targeting of histone deacetylases, IKBK and SRC inhibits epithelial-mesenchymal transition in cancer.

  • PLOS ONE - 2017

    A logic-based dynamic modeling approach to explicate the evolution of the central dogma of molecular biology M. Jafari, N. Ansari-Pour, S. Azimzadeh, M. Mirzaie.

  • JOURNAL OF CELLULAR BIOCHEMISTRY - 2017

    Human T-Lymphotropic Virus 1 (HTLV-1) Pathogenesis: A Systems Virology Study S. H. Mozhgani, M. Z. Ghobadi, M. Teymoori-Rad, T. M. Azad, M. Mirzaie, M. Sheikhi, S. M. Jazayeri, R. Shabahrami, H. Ghourchian, M. Jafari, S. A. Rezaee, M. Norouzi.

  • FRONTIERS IN MICROBIOLOGY - 2016

    Systems Biomedicine of Rabies Delineates the Affected Signaling Pathways S. A. Jamalkandi, S. H. Mozhgani, H. Gholami Pourbadie, M. Mirzaie, F. Noorbakhsh, B. Vaziri, A. Gholami, N. Ansari-Pour, M. Jafari

  • SCIENTIFIC REPORTS - 2016

    Proteomics of hot-wet and cold-dry temperaments proposed in Iranian traditional medicine: a Network-based Study Rezadoost H., Karimi M. and Jafari M.

  • JOURNAL OF PROTEOME RESEARCH - 2016

    Testis-Specific Y-Centric Protein-Protein Interaction Network Provides Clues to the Etiology of Severe Spermatogenic Failure Ansari-Pour, N., Razaghi-Moghadam, Z., Barneh, F. and Jafari, M

  • BMC BIOINFORMATICS - 2015

    Interlog protein network: an evolutionary benchmark of protein interaction networks for the evaluation of clustering algorithms Jafari M, Mirzaie M, Sadeghi M

  • BRIEFINGS IN BIOINFORMATICS - 2015

    Updates on drug target network; facilitating polypharmacology and data integration by growth of DrugBank database Barneh F, Jafari M, Mirzaie M

  • BIOCHIMICA ET BIOPHYSICA ACTA - 2015

    Signaling network of lipids as a comprehensive scaffold for omics data integration in sputum of COPD patients Azimzadeh Jamalkandi S, Mirzaie M, Jafari M, Mehrani H, Shariati P, Khodabandeh M

  • A FORSCH KOMPLEMENTMED - 2014

    Proteomics and Traditional Medicine: New Aspect in Explanation of Temperaments Jafari M, Rezadoost H, Karimi M, Mirzaie M, Rezaie-Tavirani M, Khodabandeh M, Kordafshari G, Abbasian N, Nickchi P, Gilany K, Ghassempour

  • EXPERT REVIEW OF PROTEOMICS - 2013

    Atopic dermatitis-associated protein interaction network lead to new insights in chronic sulfur mustard skin lesion mechanisms Amiri M., Jafari M., Azimzadeh Jamalkandi S., Davoodi S. M.

  • BIOCHIMICA ET BIOPHYSICA ACTA - 2013

    Exploring biological processes involved in embryonic stem cell differentiation by analyzing proteomic data Jafari M., Mirzaie M., Sadeghi M., Marashi S. A., Rezaei-Tavirani M.

  • ELECTROPHORESIS - 2012

    Comparison of in-gel protein separation techniques commonly used for fractionation in mass spectrometry-based proteomic profiling.